This listing is both necessarily incomplete (due to concealed resources) and non-exhaustive.
Agave: Fruit, Ferment, Common
Alpacas: Herbivore, Burden, Wool, Uncommon
Apples: Fruit, Ferment, Common
Amber: Mineral, Semiprecious, Uncommon
Amethyst: Mineral, Precious, Rare
Antelope: Herbivore, Common
Ant-Hounds: Carnivore, Domestic, Dangerous, Rare
Ant-Lions: Carnivore, Very Dangerous, Rare
Armor-Whales: Herbivore, Aquatic, Uncommon
Aurochs: Herbivore, Burden, Milk, Dangerous, Common
Bananas: Fruit, Uncommon
Barley: Grain, Common
Barley (Blood): Grain, Rare
Basalt: Stone, Uncommon
Beavers: Herbivore, Pelt, Uncommon
Birre-Birds: Herbivore, Domestic, Rare
Bitumen: Mineral, Fuel, Uncommon
Blackshells: Carnivore, Aquatic, Dangerous, Uncommon
Blackstone: Stone, Arcane, Rare
Bloodsilver: Ore (Bloodsilver), Arcane, Rare
Blueberries: Fruit, Common
Bluemoss: Grain, Drug, Dangerous, Rare
Bounders: Carnivore, Ore (Silver), Very Dangerous, Arcane, Rare
Breadfruit: Fruit, Uncommon
Cactus: Fruit, Common
Cactus (Flowering): Fruit, Uncommon
Camels: Herbivore, Burden, Milk, Steed, Uncommon
Caribou: Herbivore, Burden, Milk, Rare
Cassiterite: Ore (Tin), Uncommon
Cats: Carnivore, Domestic, Uncommon
Cattle: Herbivore, Burden, Milk, Common
Cedar: Timber, Rare
Chickens: Herbivore, Domestic, Common
Clams: Herbivore, Aquatic, Common
Clams (Giant): Herbivore, Aquatic, Rare
Coal: Mineral, Fuel, Uncommon
Coconuts: Fruit, Uncommon
Condor: Carnivore, Flier, Uncommon
Copper (Native): Ore (Copper), Uncommon
Cotton: Plant, Textile, Uncommon
Crabs (Rock): Herbivore, Rare
Crocodiles: Carnivore, Uncommon
Crystal Trees: Timber, Arcane, Rare
Crystal (Clear): Mineral, Uncommon
Crystal (White): Mineral, Common
Dates: Fruit, Ferment, Uncommon
Deer: Herbivore, Common
Diamonds: Mineral, Rare
Dodos: Herbivore, Domestic, Rare
Dog: Carnivore, Burden, Uncommon
Dog (Lightning): Carnivore, Domestic, Arcane, Very Dangerous, Rare
Dolphins: Carnivore, Aquatic, Uncommon
Drakes (Silver): Carnivore, Flier, Arcane, Dangerous, Rare
Dust-Bulls: Herbivore, Domestic, Milk, Dangerous, Uncommon
Dye-Snails: Herbivore, Aquatic, Rare
Elk: Herbivore, Common
Elk (Giant): Herbivore, Dangerous, Rare
Elk (Great): Herbivore, Uncommon
Emeralds: Mineral, Rare
Fireweed Flowers: Plant, Medicinal, Rare
Firs: Timber, Common
Firs (Giant): Timber, Rare
Fish (Green): Herbivores, Aquatic, Common
Fish (Pink): Herbivore, Aquatic, Common
Fish (Silver): Carnivore, Aquatic, Uncommon
Fish (Spear): Carnivore, Aquatic, Dangerous, Uncommon
Flax: Plant, Textile, Common
Fliers (Silver): Carnivore, Flier, Uncommon | Domesticated Silver Fliers give a city 2 Food and 2 Wealth. Mounted Units with Silver Fliers gain another 30% Charge bonus and may disengage at will from melee. Settlements with Silver Fliers pay 75% cost on Aetherium-based structures and military equipment.
Floatstone: Stone, Arcane, Rare
Foxes: Carnivore, Common
Foxes (Crimson): Carnivore, Arcane, Uncommon
Foxes (Scarlet): Carnivore, Arcane, Uncommon
Frankincense: Plant, Distillate, Rare
Fruits (Mountain): Fruit, Common
Galena: Ore (Lead, Silver), Common
Gazelle: Herbivore, Common
Glowtrees: Timber, Arcane, Uncommon
Goats: Herbivore, Domestic, Milk, Common
Gold (Native): Ore (Gold), Rare
Gourds: Vegetable, Common
Granite: Stone, Uncommon
Grass (Edible): Grain, Common
Grapes: Plant, Ferment, Uncommon
Greatshells: Herbivore, Arcane, Rare
Gromite: Ore (??), Rare
Ground-Squirrel (Giant): Herbivore, Dangerous, Rare
Gypsum: Mineral, Common
Haleroot: Plant, Medicinal, Rare
Healer's Hand: Plant, Medicinal, Rare
Hematite: Ore (Iron), Uncommon
Herons: Herbivore, Flier, Uncommon
Hops: Plant, Ferment, Uncommon
Horses: Herbivore, Steed, Uncommon
Horned-Horses: Herbivore, Steed, Arcane, Dangerous, Rare
Ice-Iron: Ore (Ice-Iron), Arcane, Rare
Icevines: Plant, Dangerous, Rare
Iron (Meteoric): Ore (Iron), Rare
Jade: Mineral, Rare
Lapis Lazuli: Mineral, Rare
Leopards: Carnivore, Dangerous, Uncommon
Lichen: Plant, Distillate, Uncommon
Limestone: Stone, Flux, Uncommon
Lions: Carnivore, Dangerous, Common
Lions (Emerald): Carnivore, Very Dangerous, Rare
Lions (Mountain): Carnivore, Dangerous, Common
Lizard (Flying): Carnivore, Flier, Rare
Lizard (Sea): Carnivore, Aquatic, Uncommon
Llama: Herbivore, Burden, Wool, Milk, Uncommon
Longnecks: Herbivore, Rare
Lynxes: Carnivore, Uncommon
Maize: Grain, Common
Magelmar: Ore, Arcane, Dangerous, Rare
Magnetite: Ore (Iron), Common
Malachite: Ore (Copper), Common
Mangroves: Timber, Common
Marble: Stone, Uncommon
Melons: Fruit, Common
Minks: Carnivore, Rare
Moa (Giant): Herbivore, Very Dangerous, Rare
Moose: Herbivore, Uncommon
Mulberry Trees: Timber, Textile, Rare
Myrrh: Plant, Distillate, Rare
Oak: Timber, Common
Oak (Giant): Timber, Rare
Oak (Great): Timber, Uncommon
Obsidian: Mineral, Uncommon
Oil (Crude): Mineral, Fuel, Uncommon
Oilnut: Plant, Distillate, Uncommon
Olives: Timber, Distillate, Uncommon
Opals: Mineral, Rare
Orangutans: Herbivore, Uncommon
Otter: Carnivore, Aquatic, Common
Otter (River): Carnivore, Common
Oysters: Herbivore, Uncommon
Papyrus: Plant, Textile, Uncommon
Panthers: Carnivore, Dangerous, Rare
Pear: Fruit, Common
Pigs: Herbivore, Domestic, Common
Pine: Timber, Common
Pine (Aromatic): Timber, Uncommon
Pine (Red): Timber, Common
Plums: Fruit, Common
Psarmelon: Fruit, Uncommon
Quartz: Mineral, Common
Quinoa: Grain, Common
Raspberries: Fruit, Common
Redkelp: Plant, Aquatic, Dangerous, Uncommon
Redwoods: Timber, Rare
Reefsharks: Carnivore, Aquatic, Uncommon
Rhinoceros: Herbivore, Dangerous, Uncommon
Rice (Salt): Grain, Uncommon
Rice (Wild): Grain, Common
Rocs: Carnivore, Flier, Extremely Dangerous, Rare
Rockrabbits: Herbivore, Common
Rubies: Mineral, Rare
Sabrecats: Carnivore, Dangerous, Pelt, Uncommon
Saguaro: Fruit, Common
Salamander (Giant): Herbivore, Dangerous, Rare
Salmon: Carnivore, Aquatic, Common
Salt: Mineral, Uncommon
Sandstriders: Herbivore, Burden, Rare
Sandworms: Carnivore, Steed, Extremely Dangerous, Rare
Scrub-Brush: Plant, Common
Seabirds: Carnivore, Flier, Common
Serpents (Giant Winged): Carnivore, Flier, Very Dangerous, Arcane, Rare
Servals: Carnivore, Uncommon
Scorpion (Giant): Carnivore, Very Dangerous, Uncommon
Shade Tree (Giant): Timber, Uncommon
Shale: Stone, Distillate, Uncommon
Sheep: Herbivore, Domestic, Wool, Common
Shimmersteel: Metal, Arcane, Exotic
Shimmerstone: Mineral, Arcane, Rare
Silver (Native): Mineral, Uncommon
Snakes (Fire): Carnivore, Dangerous, Uncommon
Snowberries: Fruit, Uncommon
Spice: Mineral, Arcane, Rare
Spiders (Hunting): Carnivore, Very Dangerous, Uncommon
Spirits (Ice): Unknown, Extremely Dangerous, Rare
Stalkers: Unknown, Dangerous, Uncommon
Starmetal: Ore (Ithildeen), Arcane, Rare
Steampools: Mineral, Fuel, Uncommon
Stout-Horn Deer: Herbivore, Domestic, Common
Strangleweed: Plant, Distillate, Dangerous, Uncommon
Strawberries: Fruit, Common
Swampnecks: Herbivore, Dangerous, Arcane, Rare
Swiftrats: Herbivore, Uncommon
Turtles (Sea): Herbivore, Aquatic, Common
Underground Forest: Timber, Distillate, Arcane, Rare
Vegetables (Desert): Vegetable, Common
Vegetables (Forest): Vegetable, Common
Wheat: Grain, Common
Wheat (Winter): Grain, Common
Whitedrop Flowers: Plant, Distillate, Arcane, Rare
Wild Boar: Herbivore, Common
Wisps: Unknown
Whitesilver: Ore (??), Rare
Wolves: Carnivore, Domestic, Dangerous, Common
Wolves (Great): Carnivore, Steed, Very Dangerous, Uncommon
Wolves (Swamp): Carnivore, Domestic, Dangerous, Uncommon
Wyrms (Emerald): Carnivore, Flier, Arcane, Rare
Yeti: Unknown, Very Dangerous, Uncommon